PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00387.1.p
Common NameLOC105971660, MIMGU_mgv1a006714mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 435aa    MW: 47490.7 Da    PI: 7.9163
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00387.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.8e-09112132425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       +lC+ +a+ G Ck+Gd+Ck++H
  Migut.F00387.1.p 112 KLCNLWAQ-GSCKFGDNCKYMH 132
                       69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0642550IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.462551IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-6108133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619108135IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-4110134IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6112132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-6112130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.2E-45131427IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.3E-5139178IPR001680WD40 repeat
SuperFamilySSF509782.38E-47141430IPR017986WD40-repeat-containing domain
PfamPF004003.4E-5142178IPR001680WD40 repeat
PROSITE profilePS5029422.227146348IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.585146187IPR001680WD40 repeat
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
PRINTSPR003209.2E-7165179IPR020472G-protein beta WD-40 repeat
SMARTSM003208.3218255IPR001680WD40 repeat
SMARTSM003200.012262299IPR001680WD40 repeat
PfamPF004000.083267299IPR001680WD40 repeat
PROSITE profilePS5008211.912269308IPR001680WD40 repeat
PRINTSPR003209.2E-7286300IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780286300IPR019775WD40 repeat, conserved site
SMARTSM003202.7E-5302339IPR001680WD40 repeat
PfamPF004002.2E-4304338IPR001680WD40 repeat
PROSITE profilePS500829.138309348IPR001680WD40 repeat
PRINTSPR003209.2E-7326340IPR020472G-protein beta WD-40 repeat
SMARTSM0032057343386IPR001680WD40 repeat
SMARTSM003201.6389426IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDMDGGRKVF NRLGPSSSSD NGNHNKQQKV CIYWRQGKCT RYPCPYLHSE LPSAANGKRA  60
HQGFGAEDNY RSGGGGGLRR SGNYNFNNNN TWGRTQSQQP ANNRNTLKKI EKLCNLWAQG  120
SCKFGDNCKY MHQWSTGGCF TLLAPLEGHQ QVITGIAMPP GSDKLYTGSQ DETVRLWDCQ  180
SGQVAGVVNL GVTVGCMLCE GPWVFVGLTN LVKAWNIQTS MELSLNGPVG QVYSLAVGND  240
LLFAGTQEGT ILAWKFNVAT NCFEPAASLK GHTLAVVTLV VGGNRMYSGS MDSSIRVWNL  300
ESLQCLQTLS GHTDVVMSVL CWDQFLLSAS LDKTVKIWAA TESGNLEVTY THTEEHGLLT  360
LCGMHDSEAK PVLLCSLNDN TIRAYDLPSF SERGKIFSKK EVRAMQIGPG GLFFTGDGTG  420
QVRVWKWSEP TTVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-221434258323Tako8
6g6n_A4e-221434258323Tako8
6g6n_B4e-221434258323Tako8
6g6n_C4e-221434258323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F00387.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851978.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A022Q8Q40.0A0A022Q8Q4_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1