PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.F00585.1.p

Common Name

LOC105977466, MIMGU_mgv1a020273mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 239aa MW: 25897.2 Da PI: 7.9797

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.F00585.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.3	3.9e-41	53	153	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+k+l +++e++r da++slvyeA++r+rdPvyG++g i++lq+q+e l+ae Migut.F00585.1.p 53 PCAACKLLRRRCAQECPFSPYFSPHEPHKFDAVHKVFGASNVSKMLLEVHESQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIEFLHAE 145 7****************************************************************************************** PP DUF260 94 lallkeel 101 l+++++e+ Migut.F00585.1.p 146 LNAVRNEI 153 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.85	52	153	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-40	53	150	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MSTERERFDE EIAKKIKRES DNAFPHHHQN IMGGGGRRHI SAAAAGTLNT VTPCAACKLL 60 RRRCAQECPF SPYFSPHEPH KFDAVHKVFG ASNVSKMLLE VHESQRADAA NSLVYEANVR 120 LRDPVYGCMG AISALQHQIE FLHAELNAVR NEILKYKQYN TTETNTLLHS SSSSSHITLH 180 PSGAVSIAAP PPPTPPPPPP SLPIRPLLSS SPMYNPVTSS SSGAAGGDFS TENITYFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-40	43	156	1	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-40	43	156	1	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.F00585.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858226.1	1e-177	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	2e-76	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A022PX63	1e-176	A0A022PX63_ERYGU; Uncharacterized protein
STRING	Migut.F00585.1.p	1e-176	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-77	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Migut.F00585.1.p
Entrez Gene	105977466

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]