PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.F00636.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 201aa MW: 22211 Da PI: 6.7037

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.F00636.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.8	2.1e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r d++sslvyeA+arardPvyG+vg i+ lq+q++ql+ + Migut.F00636.1.p 7 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRGDTVSSLVYEANARARDPVYGCVGAISYLQNQVAQLQMQ 99 7****************************************************************************************** PP DUF260 94 lallkee 100 la++++e Migut.F00636.1.p 100 LAMAQAE 106 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.738	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-44	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MGSGSSPCAS CKLLRRRCAK DCIFAPYFPS DDPHKFAIVH KVFGASNVSK MLQELPVHQR 60 GDTVSSLVYE ANARARDPVY GCVGAISYLQ NQVAQLQMQL AMAQAEMLCI QMQAQAQEQN 120 HHNQSINQLQ LHQAPLLLLD QTADIDVGDD KSTSSFYLQN HHQLLNFAAA NSNINANTNN 180 NNVIYDSFKK ESLYGYDMVS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-47	2	108	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-47	2	108	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.F00636.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858386.1	1e-148	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-75	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A022PX25	1e-104	A0A022PX25_ERYGU; Uncharacterized protein (Fragment)
STRING	Migut.F00636.1.p	1e-147	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-57	LBD family protein

Link Out ? help Back to Top
Phytozome	Migut.F00636.1.p

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]