PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00683.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-X1
Protein Properties Length: 787aa    MW: 87657.8 Da    PI: 8.3318
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00683.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.69.6e-07235254120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG H+C+++CH G C pC++
  Migut.F00683.1.p 235 CGVHRCGEICHDGSCLPCKE 254
                       ******************96 PP
2zf-NF-X1171.3e-05288307120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG+H C++ CHeG+C+ Cp+
  Migut.F00683.1.p 288 CGRHVCERGCHEGDCGDCPL 307
                       ******************95 PP
3zf-NF-X118.25.4e-06395414120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG+H C++ C+ G+CppC++
  Migut.F00683.1.p 395 CGRHACKRRCCDGDCPPCSE 414
                       ******************85 PP
4zf-NF-X117.96.8e-06419436320
          zf-NF-X1   3 kHkCqklCHeGpCppCpq 20 
                       +HkC ++CH G C pCp+
  Migut.F00683.1.p 419 NHKCPAPCHIGACAPCPL 436
                       7***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.24E-572144No hitNo description
PROSITE patternPS01359073137IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.0066183201IPR000967Zinc finger, NF-X1-type
PfamPF014220.0019183200IPR000967Zinc finger, NF-X1-type
CDDcd060081.26E-7225273No hitNo description
SMARTSM004380.0025235254IPR000967Zinc finger, NF-X1-type
PfamPF014225.2E-4235253IPR000967Zinc finger, NF-X1-type
CDDcd060089.40E-8278318No hitNo description
SMARTSM004389.4E-4288307IPR000967Zinc finger, NF-X1-type
PfamPF014220.0035288306IPR000967Zinc finger, NF-X1-type
CDDcd060088.23E-8332381No hitNo description
SMARTSM004382342362IPR000967Zinc finger, NF-X1-type
PfamPF014220.42345361IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092395414IPR000967Zinc finger, NF-X1-type
PfamPF014227.5E-4395413IPR000967Zinc finger, NF-X1-type
CDDcd060089.94E-7415454No hitNo description
SMARTSM004380.0038417436IPR000967Zinc finger, NF-X1-type
PfamPF014220.026417435IPR000967Zinc finger, NF-X1-type
SMARTSM0043841480495IPR000967Zinc finger, NF-X1-type
PfamPF0142210484494IPR000967Zinc finger, NF-X1-type
SMARTSM0043858503548IPR000967Zinc finger, NF-X1-type
PfamPF0142226503512IPR000967Zinc finger, NF-X1-type
SMARTSM004382.2585612IPR000967Zinc finger, NF-X1-type
PfamPF014220.23585595IPR000967Zinc finger, NF-X1-type
SMARTSM004380.09622640IPR000967Zinc finger, NF-X1-type
PfamPF014220.21623639IPR000967Zinc finger, NF-X1-type
SMARTSM0043811685706IPR000967Zinc finger, NF-X1-type
PfamPF014221.8687704IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MSSSAVQPPL SSDSDSDTSS PSSSSTHHRH ADLSSSIFQS YLSHSSYPHN DRNQDLIKIQ  60
SFLTSSRSGA LSCLICLERI KPTDPTWSCS SSCFALFHLL CIQSWANQSI NLAASRASLR  120
AAVVPDENSL VWPCPKCRVE YRKTQTPKNY FCFCGKVQDP PRDPWVLPHS CGEICGRSLK  180
YDCGHFCLLL CHPGPCPACP KLVRNKCFCR KSEDVKRCGF KNFSCNGVCK KLLECGVHRC  240
GEICHDGSCL PCKEKGTYKC QCGKVETTRE CCERDFRCDN ACNRMLGCGR HVCERGCHEG  300
DCGDCPLQGK MTCPCGKRAY EGMACDVAVP LCGATCEKML SCRFHRCSER CHRGPCIQTC  360
RNVVTKSCRC GSLKKQVPCY QELTCERKCQ KVRDCGRHAC KRRCCDGDCP PCSELRCRNH  420
KCPAPCHIGA CAPCPLMVRI SCSCGETQFE VPCGIENEQK PPRCRKTCPV APLCRHRSSC  480
KPHKCHYGAC PPCRLVCDEE YSCGHKCKLR CHGPQPPPNP EFTLKPRKKK SNQPSEPTPG  540
SACPPCPEPV LRSCFGHHIG TERMMVCSNR AEFSCDNLCG NPLPCGNHYC TYVCHAMKAR  600
SSKSDTCEEC NLPCEKEREP ACQHPCPLPC HRGECPPCKT LIKRSCHCGS MKHVFECKYF  660
NCLSEKEQMA VRSCKGPCHR KLPNCTHLCP ETCHPGACPL PDKCSKKVTV RCGCQTLKKE  720
WLCQDVQTAY HSSVQKIVAA VKKVMLVIVI VVIVIASAYL GYKGLVWLSD WMNENEARQR  780
RKYSRN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F00683.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858123.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2G9GDU00.0A0A2G9GDU0_9LAMI; Transcription factor NF-X1
STRINGMigut.F00683.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors