PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.F00757.1.p

Common Name

LOC105977524, MIMGU_mgv1a022039mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 200aa MW: 22135.8 Da PI: 4.4961

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.F00757.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.9	2e-39	7	108	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrr+C+++C++apyf+ eq +++fa+vh++FGasnv+kll++lp + r+da+ ++ yeA ar+++PvyG+v++i +lqqq+++l++ Migut.F00757.1.p 7 SCGACKFLRRRCTNECIFAPYFCYEQaANHFAAVHRIFGASNVSKLLSHLPVHSRNDAAITISYEALARIQEPVYGCVAHIYSLQQQVASLEE 99 6*********************9978************************************************************* PP DUF260 93 elallkeel 101 e++ l++++ Migut.F00757.1.p 100 EIEILGNQI 108 *998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.008	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.2E-37	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MTGVSSSCGA CKFLRRRCTN ECIFAPYFCY EQAANHFAAV HRIFGASNVS KLLSHLPVHS 60 RNDAAITISY EALARIQEPV YGCVAHIYSL QQQVASLEEE IEILGNQIAN IGVNIAPYET 120 SNPYFAAQSE IGSNCSNQQS LPILHPEASG SFCHAGLQTV DEVSEGFLNS SIFEMLLEEL 180 NQDYYLLEEL SQDYYYMHS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-34	3	102	7	105	LOB family transfactor Ramosa2.1
5ly0_B	6e-34	3	102	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.F00757.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858285.1	1e-145	PREDICTED: LOB domain-containing protein 33
Swissprot	Q9LHS8	2e-53	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A022PYK8	1e-144	A0A022PYK8_ERYGU; Uncharacterized protein
STRING	Migut.F00757.1.p	1e-145	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12769	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	7e-56	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	Migut.F00757.1.p
Entrez Gene	105977524

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]