PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F01545.1.p
Common NameMIMGU_mgv1a015679mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 150aa    MW: 17188.6 Da    PI: 8.9373
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F01545.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-143983247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      g+W   Ede+l  av+++G ++W++I++ +   R++kqck rw++ 
  Migut.F01545.1.p 39 GAWKNTEDEILTAAVNKYGENQWSKISSLLV-PRSPKQCKARWYDC 83
                      79*****************************.9**********975 PP
2Myb_DNA-binding33.21.2e-1092133347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WT+eEde+l+++ k++++  W+tIa  +   R + qc +r+ k+
  Migut.F01545.1.p  92 EWTQEEDEKLLCLAKLMPKQ-WRTIAPIVE--RPPSQCLERYKKL 133
                       7*****************99.********9..**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.0463388IPR017930Myb domain
SuperFamilySSF466893.67E-2036118IPR009057Homeodomain-like
SMARTSM007175.0E-133786IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-213991IPR009057Homeodomain-like
CDDcd001672.81E-124081No hitNo description
PfamPF139218.6E-1641101No hitNo description
CDDcd116593.07E-2586135No hitNo description
SMARTSM007171.6E-1189136IPR001005SANT/Myb domain
PROSITE profilePS5129412.91489138IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-1392136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MENTFTPRTP PESRSAIEAF RKGKLRNPRK KERSNIMGGA WKNTEDEILT AAVNKYGENQ  60
WSKISSLLVP RSPKQCKARW YDCLDPSINT TEWTQEEDEK LLCLAKLMPK QWRTIAPIVE  120
RPPSQCLERY KKLVDPTGAT DENPVLLQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jb9_W5e-47361474115Pre-mRNA-splicing factor cdc5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F01545.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842448.16e-79PREDICTED: cell division cycle 5-like protein isoform X1
SwissprotP929482e-49CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A022QZR31e-105A0A022QZR3_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1795734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-51cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]