PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F01550.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24279.1 Da    PI: 10.2251
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F01550.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF473.2e-1525591549
                      HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      kRr+g++KKA+ELS+LC+ae  v++fs++ k + y
  Migut.F01550.1.p 25 KRRAGLFKKASELSTLCGAESVVVVFSPREKPHSY 59
                      9****************************998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.9E-9662IPR002100Transcription factor, MADS-box
PfamPF003193.4E-162459IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-162479IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-92540IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.8012563IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-94061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSSSNQNNSS ENNPNPQIKG KGPQKRRAGL FKKASELSTL CGAESVVVVF SPREKPHSYG  60
NPSVKTVVDW FFNPNRNPNS RNEAHQLQRA AQGDAIMHHR NQEVGSWEAQ LKQEKERRKA  120
NENLSTAPQC HRWCPTNIDD LNYQQLDELK RSIMKFKQSF EFYGNNEPLM VQGGSSNIPS  180
TQFYGGIGTS NPRVNASSSV FFFTVTLHFI RKKY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F01550.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842446.11e-160PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A022R2T51e-142A0A022R2T5_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1979523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-19AGAMOUS-like 61