PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F01801.1.p
Common NameLOC105955660, MIMGU_mgv1a019167mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 188aa    MW: 20978.8 Da    PI: 4.859
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F01801.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601361.4e-42281281101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+C ++Cvlapyfp ++p kfa++h++FGasn++k l++lpe++r da++s+vyeA+ar+rdP+yG++g+i +lq+q+ +l+ae
  Migut.F01801.1.p  28 PCAACKILRRRCGEKCVLAPYFPPTDPLKFAIAHRVFGASNIIKCLQELPEDQRADAVNSMVYEANARVRDPIYGCTGTICHLQNQIGELQAE 120
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       la++++e+
  Migut.F01801.1.p 121 LAKAHAEI 128
                       ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.81327128IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-4228125IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEYSRKTNTA GDSPTSSISP DPAVILSPCA ACKILRRRCG EKCVLAPYFP PTDPLKFAIA  60
HRVFGASNII KCLQELPEDQ RADAVNSMVY EANARVRDPI YGCTGTICHL QNQIGELQAE  120
LAKAHAEIFN MQCQNSKLFE FISIRNVLEN SRQAEMQQLP LFDENSSSNF FTDEANLELS  180
NWETLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-422713310116LOB family transfactor Ramosa2.1
5ly0_B4e-422713310116LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F01801.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834884.11e-139PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR05e-68LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A022RJ551e-138A0A022RJ55_ERYGU; Uncharacterized protein
STRINGMigut.F01801.1.p1e-138(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-70LOB domain-containing protein 1