PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F02029.1.p
Common NameMIMGU_mgv1a019423mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 213aa    MW: 23269.3 Da    PI: 4.859
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F02029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.61.8e-42521511100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll++l+e++r da++s+vyeA+ar+rdP+yG++g i +lq+q+++l+ae
  Migut.F02029.1.p  52 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQDLEEDQRADAVNSMVYEANARLRDPIYGCTGAICQLQKQISELQAE 144
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Migut.F02029.1.p 145 LAKAQAE 151
                       ***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.45551152IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-4252149IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:1.20.58.603.7E-4104169No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGYSGNATTP TAAAAATSAA EKSSPTSSTS SLFSTSTTTT TTPPSHTVIL SPCAACKILR  60
RRCVEKCVLA PYFPPTEPLK FTIAHRVFGA SNIIKLLQDL EEDQRADAVN SMVYEANARL  120
RDPIYGCTGA ICQLQKQISE LQAELAKAQA EIFNIQCQNS NLSDIICRKM AEEQNVQEKL  180
QQVQVAPYDN HENSIFFFDE SVLGVDWEPL WT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-425115710116LOB family transfactor Ramosa2.1
5ly0_B3e-425115710116LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F02029.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834486.11e-126PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK084e-68LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A022RH941e-157A0A022RH94_ERYGU; Uncharacterized protein
STRINGMigut.F02029.1.p1e-157(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-59LOB domain-containing protein 11