PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.G00007.2.p
Common NameMIMGU_mgv1a000988mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family SBP
Protein Properties Length: 922aa    MW: 102300 Da    PI: 7.4723
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.G00007.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.21.6e-40129206178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cqve+C+adls+ak+yhrrhkvC+ hsk++++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Migut.G00007.2.p 129 VCQVEDCRADLSNAKDYHRRHKVCDLHSKSTSALVGDVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 206
                       6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.1E-32124191IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.684127204IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-36129207IPR004333Transcription factor, SBP-box
PfamPF031107.4E-29130203IPR004333Transcription factor, SBP-box
CDDcd002042.92E-4674808No hitNo description
Gene3DG3DSA:1.25.40.202.0E-4707807IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MESKIGGEKI HKSMEWDSNE WRWDGALFVA TPLNSVPSDC RSRQLGSDEL VLLGDGNGNG  60
REKRELEKRT RGVLEMEENE SEDVGLPNLK LGGQVYPIAE RDMYEMEGKS GKKTKVSSAL  120
PMSTSSRSVC QVEDCRADLS NAKDYHRRHK VCDLHSKSTS ALVGDVMQRF CQQCSRFHVL  180
QEFDEGKRSC RRRLAGHNKR RRKTHPENDE PANSSDQIQD QDLVSHLLKN LAHLTGTNPA  240
GVLPISQNVG TSLGTALKGL SAPSGPGVTI PASDLTEKRT LIGGVSHAST SESPLPFRTT  300
SSDLFKEKDS NTGVGRTKLS NIDLNCAYDG SQDCMEDMPN TSHLNKTSPG GSSWLCKDSQ  360
RCGPPQNSGN SASTSSQSPS TSSGEAQSRT DRIVFKLFGK DPSDFPLLLR KQILDWLSNS  420
PTDIESYIRP GCIILTIYLR MEKSSWDELY CNLTSSLLRL LNSSTDSFWR TGWIYTRVHH  480
HVTFMYNGQV VLDTPLPVRN HQSCRISSIK PIAVTVSEGV HFVVKGFNLS RSTSRLLCAL  540
EGKYLVQENC ADMTGRADSL TEHDQIQSLT FSCAVPNIVG RGFIEIEDHG LSSSFFPFIV  600
AEKDVCSEIC SLESVIEDAN EIQVRNEALD FIHEMGWLLQ RNRLKSRLGD GDLFPFERFR  660
RLTEFSIDHD WCAVVKKLLR ILFDDGTVDL GPHNSNIVAL LNDVGLVHRA VRRKCSSMVR  720
FLLNEKNPLA DGGGGAHLYL FRPDAAGPGG LTPLHIAASL DGCENVLDAL TEDPGSVGIE  780
EWKRGRDSSV LTAHDYACIR GQYSYINIVQ RKVDKKSTVV GVGVDIGDSS SSRGEVVLSV  840
SVDKKMEIER RRRRCGECEE RIMRYGNRST RGRVRIYRPA MLSLVGIAAV CVCTALLFKS  900
SPEVLFSFRP FRWDQLKYGS Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-301292031084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198204KRRRKTH
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.G00007.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7179661e-151KT717966.1 Erythranthe guttata squamosa promoter-binding protein 3 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842609.10.0PREDICTED: squamosa promoter-binding-like protein 12
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A022R2N50.0A0A022R2N5_ERYGU; Uncharacterized protein
STRINGMigut.G00007.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]