PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.G01004.1.p
Common NameLOC105958033, MIMGU_mgv1a012663mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family DBB
Protein Properties Length: 245aa    MW: 27273.7 Da    PI: 4.7004
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.G01004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.6e-07444539
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                       C+ +e+ +++  C  ++  lC++C +e H        H++
  Migut.G01004.1.p  4 QCDVCEKAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44
                      7*****************************65667777765 PP
2zf-B_box27.75.4e-095395238
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                      + + C+ ++ek + +fC +++ ++C+dC +++H+       H+
  Migut.G01004.1.p 53 KLPSCDICQEKTAFIFCVEDRAMFCKDCDDAIHSAnsraanHQ 95
                      6789*****************************6556666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.3147IPR000315B-box-type zinc finger
CDDcd000214.29E-7347No hitNo description
SMARTSM003368.9E-10447IPR000315B-box-type zinc finger
PfamPF006432.1E-5444IPR000315B-box-type zinc finger
PROSITE profilePS501199.1865299IPR000315B-box-type zinc finger
SMARTSM003363.1E-145299IPR000315B-box-type zinc finger
PfamPF006432.9E-75395IPR000315B-box-type zinc finger
CDDcd000211.80E-65591No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MKIQCDVCEK APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLECL SNKLPSCDIC  60
QEKTAFIFCV EDRAMFCKDC DDAIHSANSR AANHQRFLAT GIKVALNSSC NKEASKSQLD  120
PKPPKSNVQQ QQQQQQIGLK TTPHNVSAVS SPSWAVDDLL QFSYDSSDKK EQLDFNELEW  180
LTEMNLFGEQ VPQEALDAAE VPQLPMSQSN TMNSYYRAPK YYSPNKKPRI EDDDEEFFTV  240
PDLG*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.G01004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837486.10.0PREDICTED: B-box zinc finger protein 25-like
SwissprotQ9SID17e-97BBX25_ARATH; B-box zinc finger protein 25
TrEMBLA0A022REQ11e-180A0A022REQ1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54102233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.12e-98salt tolerance homologue
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]