PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.H00041.1.p

Common Name

LOC105969943, MIMGU_mgv1a007498mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

C3H

Protein Properties

Length: 406aa MW: 44568.8 Da PI: 7.1428

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.H00041.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.8	4.9e-10	83	104	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f rtGtCk+G++C+++H+ Migut.H00041.1.p 83 DCPHFVRTGTCKFGPSCRYNHP 104 5********************8 PP
2	zf-CCCH	21.3	4.8e-07	125	146	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f+ C+yG +C++ H+ Migut.H00041.1.p 125 ECKYFSTAEGCRYGKSCRYVHP 146 7********************8 PP
3	zf-CCCH	27.2	6.5e-09	169	191	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C f+ r+G C+yG+rC ++H++ Migut.H00041.1.p 169 ECLFYIRNGSCRYGSRCVYNHPE 191 7********************96 PP
4	zf-CCCH	29.1	1.8e-09	306	332	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff++tG Ck+ +C+F+H++ Migut.H00041.1.p 306 PGQPECDFFMKTGDCKFKLTCRFHHPK 332 5789*********************96 PP
5	zf-CCCH	22.2	2.5e-07	352	377	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ Cr++ r G Ck+G C F H+ Migut.H00041.1.p 352 PGRSVCRHYERHGLCKFGRACMFDHP 377 58999********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.003	78	105	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.652	78	106	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.23E-6	83	109	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.3E-8	83	104	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	84	105	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.16	120	147	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.211	120	148	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-4	125	146	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.76E-5	125	151	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.4E-5	126	149	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.535	164	192	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0028	164	191	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.93E-6	165	192	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.1E-6	168	191	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.6E-4	170	190	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.99	305	333	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.5E-4	305	332	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.2E-7	307	332	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.013	351	378	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.723	351	379	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-5	352	377	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-5	354	379	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.3E-4	356	377	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MPTMGTHEDD SRTSPPLPDP PSEDQKLEFP TADPSKDDLI GRMENLVLKS DADHDGIGNA 60 DGNKDGGALG STGFLPLRPY AGDCPHFVRT GTCKFGPSCR YNHPIKKLHQ LSDGGFESGI 120 SGVIECKYFS TAEGCRYGKS CRYVHPGEES DVTPQLNQLG LPTRLGAKEC LFYIRNGSCR 180 YGSRCVYNHP EPASVEGYIH QNPMDGKFVK QVGDLSENRN VGYMHLSGAS EAYQAPRSLN 240 KLSGNIDAYL GNLISPQWVD KQPKWNGYQA SSYLPRTGNS YSAPITDGSL RKVDISVDID 300 EFPERPGQPE CDFFMKTGDC KFKLTCRFHH PKNRACRPGE CVLNENGLPL RPGRSVCRHY 360 ERHGLCKFGR ACMFDHPASH SLSTYPVWSS VKTDSGGGNC GGWAD*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MPTMGTHEDD SRTSPPLPDP PSEDQKLEFP TADPSKDDLI GRMENLVLKS DADHDGIGNA  60
DGNKDGGALG STGFLPLRPY AGDCPHFVRT GTCKFGPSCR YNHPIKKLHQ LSDGGFESGI  120
SGVIECKYFS TAEGCRYGKS CRYVHPGEES DVTPQLNQLG LPTRLGAKEC LFYIRNGSCR  180
YGSRCVYNHP EPASVEGYIH QNPMDGKFVK QVGDLSENRN VGYMHLSGAS EAYQAPRSLN  240
KLSGNIDAYL GNLISPQWVD KQPKWNGYQA SSYLPRTGNS YSAPITDGSL RKVDISVDID  300
EFPERPGQPE CDFFMKTGDC KFKLTCRFHH PKNRACRPGE CVLNENGLPL RPGRSVCRHY  360
ERHGLCKFGR ACMFDHPASH SLSTYPVWSS VKTDSGGGNC GGWAD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.H00041.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012850169.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
TrEMBL	A0A022S0R2	0.0	A0A022S0R2_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16408	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	9e-80	C3H family protein

Link Out ? help Back to Top
Phytozome	Migut.H00041.1.p
Entrez Gene	105969943