PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.H00081.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 162aa MW: 17625.8 Da PI: 8.2008

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.H00081.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.4	5.2e-43	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC ++C++apyfpaeqp kf vhk+FGasnv kll+++p+++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++e Migut.H00081.1.p 11 PCAACKFLRRKCLPGCTFAPYFPAEQPTKFVHVHKIFGASNVGKLLNEIPPHQREDAVNSLAYEAEARLNDPVYGCVGAISVLQRQVFNLQKE 103 7******************************************************************************************** PP DUF260 94 lallke 99 l+++++ Migut.H00081.1.p 104 LDATNA 109 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.606	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-42	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MASSSSSNPA PCAACKFLRR KCLPGCTFAP YFPAEQPTKF VHVHKIFGAS NVGKLLNEIP 60 PHQREDAVNS LAYEAEARLN DPVYGCVGAI SVLQRQVFNL QKELDATNAD IIRYAASRTN 120 SNNDWRIDPD GSGYFDPNSG LFLPYYWSGG GGAAPPSRRD R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-61	10	115	10	115	LOB family transfactor Ramosa2.1
5ly0_B	2e-61	10	115	10	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.H00081.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012850821.1	1e-118	PREDICTED: protein LATERAL ORGAN BOUNDARIES
Swissprot	Q9FML4	2e-61	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2R6RTM5	1e-68	A0A2R6RTM5_ACTCH; Protein LATERAL ORGAN BOUNDARIES like
TrEMBL	A0A2R6RYX5	1e-68	A0A2R6RYX5_ACTCH; Protein LATERAL ORGAN BOUNDARIES like
STRING	Migut.H00081.1.p	1e-117	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-56	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Migut.H00081.1.p

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]