PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00102.2.p
Common NameLOC105969410, MIMGU_mgv1a013642mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 178aa    MW: 20490.2 Da    PI: 8.0452
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00102.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-173174146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Migut.H00102.2.p 31 RGNITAEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 74
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.484125IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.2E-111137IPR009057Homeodomain-like
SuperFamilySSF466891.46E-221185IPR009057Homeodomain-like
PROSITE profilePS5129425.4032680IPR017930Myb domain
SMARTSM007173.8E-153078IPR001005SANT/Myb domain
PfamPF002494.1E-163174IPR001005SANT/Myb domain
CDDcd001671.28E-123574No hitNo description
Gene3DG3DSA:1.10.10.602.5E-203876IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MICVDFGVGL KRTGKSCRLR WLNYLRPDVR RGNITAEEQL LIMELHAKWG NRWSKIAKHL  60
PGRTDNEIKN YWRTRIQKHI KQADQNCSTG QLADVSNDQA STSQLSSCCP ADNHTVESYS  120
PSSFNANIEP FQPPFPTESN ENLWSMEDLW SCSYSTANKY IYIYIYIHVC VYVYVVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-18128040108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00102.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3608932e-36EU360893.1 Petunia x hybrida Myb-like transcription factor EOBII mRNA, complete cds.
GenBankJF7939192e-36JF793919.1 Petunia axillaris MYB transcription factor EOBII (EOBII) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849621.11e-125PREDICTED: myb-related protein 305
SwissprotP813911e-73MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A022RXN61e-124A0A022RXN6_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.13e-57myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]