PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00190.1.p
Common NameMIMGU_mgv1a013956mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HD-ZIP
Protein Properties Length: 214aa    MW: 24381.2 Da    PI: 7.1464
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-2069121456
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       ++++++eq++ Le+ F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Migut.H00190.1.p  69 KRKLSEEQVNMLERSFGSEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWK 121
                       45899***********************************************9 PP
2HD-ZIP_I/II120.21.1e-3868159293
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       +kr+ls+eqv++LE+sF +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ + +n++Le+e  +L+e+l+e
  Migut.H00190.1.p  68 RKRKLSEEQVNMLERSFGSEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKAEHESTVVKNCHLETELLKLKEQLNE 159
                       8****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.90863123IPR001356Homeobox domain
SMARTSM003892.9E-1966127IPR001356Homeobox domain
CDDcd000862.82E-1668124No hitNo description
SuperFamilySSF466893.25E-1869131IPR009057Homeodomain-like
PfamPF000461.5E-1769121IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.7E-2170130IPR009057Homeodomain-like
PRINTSPR000315.8E-694103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000315.8E-6103119IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MNSEFEDQMV LISQYYPDGM YNNHHFVPEQ TGGGAAAGVV NSKPRRRRKK NKGGGGDEGC  60
GGVEGMLRKR KLSEEQVNML ERSFGSEHKL ESERKDKLAA ELGLDPRQVA VWFQNRRARW  120
KSKKLEEEYS KLKAEHESTV VKNCHLETEL LKLKEQLNEA NRAIQMLSEQ RSDGFSSNSP  180
SSSFSMEGLG NVFYAAENNY FHGMEWDNNI YYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671LRKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00190.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856819.11e-158PREDICTED: homeobox-leucine zipper protein ATHB-53-like
SwissprotO232084e-57ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A022RX811e-150A0A022RX81_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-33homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]