PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00243.1.p
Common NameMIMGU_mgv1a024953mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 334aa    MW: 37124 Da    PI: 7.688
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00243.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.81.2e-15253277226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ktelC+ +++tGtC+yG++C+FaHg
  Migut.H00243.1.p 253 KTELCNKWQETGTCPYGENCQFAHG 277
                       9***********************9 PP
2zf-CCCH19.71.5e-06290314125
                       --S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                       ykte Cr  +++ +C+yG rC+F H
  Migut.H00243.1.p 290 YKTEVCRMVLAGDICPYGHRCHFRH 314
                       9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-18247284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-11248283IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-8251278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.051251279IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-12253277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8285318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-11285318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821289317IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5289316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MQKENISFNP LITATSAAGG VAPPRFSSSN NPFLSPIPPV NCLGTNSSYY SPLFQNYSPN  60
SISDAASFDG GDTERSLHDA SSVLEYQQLY NRYALCLSQL HDSVDEVEDL RLENESLRLS  120
NADLSRRVAL LFTRDRLLSE FNRLSIASPS AAAAPPIPVH VAAPPPPRPL SENNLRIQPP  180
PLPLSENNRL EPRSTERVSL PKSISVRSRG YLKMTRQKTV SQPCPDLQRV CVPGAKKEEE  240
ALEFDVYNQG MMKTELCNKW QETGTCPYGE NCQFAHGVKE LRPVIRHPRY KTEVCRMVLA  300
GDICPYGHRC HFRHALTEEE RLVAASSLPP PPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22253318570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00243.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856747.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
TrEMBLA0A022RXA40.0A0A022RXA4_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-68C3H family protein