PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00286.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27710.8 Da    PI: 9.6758
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00286.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.9e-28958150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      +ri+n++ rqvtfskRr g+lKKA+ELS+LCdaev +iifs+tgklye+s
  Migut.H00286.1.p  9 ERIDNTTSRQVTFSKRRSGLLKKAKELSILCDAEVGLIIFSTTGKLYEFS 58
                      69***********************************************8 PP
2K-box81.91.5e-27851731199
             K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        ++   +++e+a+L++++  Lq+++R+l+Ge+L  +s+ +Lq+Le+qLe+sl  +R kK+++l+e+i+el++k + +++en +L kk++
  Migut.H00286.1.p  85 GSEIMFWKREAANLRQQLLDLQENHRKLMGEELCGMSVDDLQRLENQLETSLGGVRMKKEQILTEKIQELKRKGNLMHQENVELYKKVK 173
                       567789*******************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.314161IPR002100Transcription factor, MADS-box
CDDcd002651.23E-40279No hitNo description
SuperFamilySSF554555.76E-32293IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.7288178IPR002487Transcription factor, K-box
PfamPF014863.7E-2588172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGKIVIER IDNTTSRQVT FSKRRSGLLK KAKELSILCD AEVGLIIFST TGKLYEFSGD  60
NRSMKSIIDR YTKAKEEHHK LLNPGSEIMF WKREAANLRQ QLLDLQENHR KLMGEELCGM  120
SVDDLQRLEN QLETSLGGVR MKKEQILTEK IQELKRKGNL MHQENVELYK KVKFMEEENT  180
ELYRKAYGAR EIFVPNNGSG FLSFGLTIND GPIQLQLSQP AQPDNIETPT RTTESRYKIR  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-19184182MEF2C
5f28_B4e-19184182MEF2C
5f28_C4e-19184182MEF2C
5f28_D4e-19184182MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00286.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855712.11e-175PREDICTED: MADS-box transcription factor 23-like
SwissprotQ9SZJ61e-95AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A022RXZ01e-131A0A022RXZ0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.14e-98AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]