PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.H00361.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 205aa MW: 22213.3 Da PI: 7.6885

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.H00361.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	89	6.1e-28	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++ C+l+p + +a+q +++ +++k+FG++ ++++++a+p+++r+++++sl++eA r+ +Pv+G+vg++++++++++ Migut.H00361.1.p 2 SCNGCRVLRKGCSDTCILRPSLqsietAAAQGHATIFLAKFFGRAGLISFISAVPDTQRPALFQSLLFEAAGRTVNPVNGSVGLLSSGNWHIC 94 6*******************8888777889********************************************************* PP DUF260 89 qlkaelall 97 q+++e++l+ Migut.H00361.1.p 95 QSAVETVLR 103 *998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.985	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-23	2	100	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSCNGCRVLR KGCSDTCILR PSLQSIETAA AQGHATIFLA KFFGRAGLIS FISAVPDTQR 60 PALFQSLLFE AAGRTVNPVN GSVGLLSSGN WHICQSAVET VLRGGALKPL PEFMDPDDSS 120 ECTDIMFKIQ DDPCRSTSLP KVQKRRRSPD DDLDLSLSPD FTGKKSSPLP EKRRHGSPSM 180 NSEESLTTTC QNQPPTEIKL LNLF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	145	PKVQKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.H00361.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012856442.1	1e-149	PREDICTED: LOB domain-containing protein 37
Swissprot	Q9FN11	1e-73	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A2G9HZ72	1e-105	A0A2G9HZ72_9LAMI; Uncharacterized protein
STRING	Migut.H00361.1.p	1e-148	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	4e-67	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Migut.H00361.1.p

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]