PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00426.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 191aa    MW: 21084.9 Da    PI: 9.6045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00426.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.8e-10113154854
                       HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       + rrRR+ri +++  L++++P  a      Kl+ a++L +Av+Y+k L
  Migut.H00426.1.p 113 AARRRRERISQRIRVLQRMVPGgA------KLDTASMLDEAVHYMKFL 154
                       56*******************966......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.218105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-14106164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-14109163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7114154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-6127159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDYFNPMTSF HMSNNRTATE LNGGFQGINL TSDQSSDFEY SGGSPAKFPH FPQNMEFPST  60
SLSVLQNRGS MEAMRETIFR MAMMQPVQID DPETFDRPAR KNVRISKDPQ SVAARRRRER  120
ISQRIRVLQR MVPGGAKLDT ASMLDEAVHY MKFLKKQVQS LEEAANSGGG GGGGGSVSFP  180
LMGCSMQMLS *
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00426.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1825590.0AC182559.2 Erythranthe guttata clone MGBa-22D19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855465.11e-139PREDICTED: transcription factor HEC1
SwissprotQ9SND41e-40HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2G9H2F13e-56A0A2G9H2F1_9LAMI; Uncharacterized protein
STRINGMigut.H00426.1.p1e-139(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.18e-36bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]