PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00465.1.p
Common NameLOC105972674, MIMGU_mgv1a009012mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 356aa    MW: 39727.3 Da    PI: 7.1522
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00465.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.51.7e-4171061100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk lrrkC+++Cv+apyfp ++p+kf nvhk+FGasnv kll++l+  +reda++sl+yeAe r+rdPvyG+vg i+ lqq+l+q++ e
  Migut.H00465.1.p   7 PCAACKCLRRKCTQECVFAPYFPPDNPQKFTNVHKVFGASNVAKLLNELNAAHREDAVNSLAYEAEQRLRDPVYGCVGQISILQQRLKQVQIE 99 
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       l+++k+e
  Migut.H00465.1.p 100 LDSAKKE 106
                       **99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.9076107IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-417104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSSSNSPCAA CKCLRRKCTQ ECVFAPYFPP DNPQKFTNVH KVFGASNVAK LLNELNAAHR  60
EDAVNSLAYE AEQRLRDPVY GCVGQISILQ QRLKQVQIEL DSAKKELSAY IGPAALMPML  120
NNQGFLQHHS NFNPAAAAAA YQMVPYNVQQ MMGPPTGVPH GAAQLMIRGG DPHHPHHQHH  180
QQQQQQFLEA QQLAMAAAAA AREQEMLRTF EHQQNHHQQQ HSELVRFNNG FDDDEVGGPV  240
TATGFNQMVT AAAPVAAQPS LALGNAYETI PYHQIQHQQQ EHSHNQTHML SHHPHQIQLQ  300
PQDLLQQQQQ HIVAAHHQQQ HQQQQHQLAA AQTHATQSQQ QQQPMRAKSE EGRSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4731107114LOB family transfactor Ramosa2.1
5ly0_B2e-4731107114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00465.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853105.10.0PREDICTED: LOB domain-containing protein 36 isoform X1
SwissprotQ9FKZ33e-72LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A022RV310.0A0A022RV31_ERYGU; Uncharacterized protein
STRINGMigut.H00465.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.17e-66ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]