PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00491.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 257aa    MW: 29911.6 Da    PI: 4.6357
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00491.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.2e-111388385
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                       vl++ + +k   l +p  f++++g + +e    +l+++ g+ W+vk+  +   +  ++t GW++Fv++ +L+  +f+vF ++
  Migut.H00491.1.p 13 AVLVQDYINK---LQVPPAFVRKCGFNWPE--NAQLRTSCGEIWDVKI--EEFNECKYFTVGWRKFVEDAELRREEFLVFWFN 88
                      5555555554...569********888555..69**************..44444457999*******************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-174100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-187106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.5888102IPR003340B3 DNA binding domain
CDDcd100172.79E-13999No hitNo description
SMARTSM010194.5E-711102IPR003340B3 DNA binding domain
PfamPF023622.0E-81287IPR003340B3 DNA binding domain
Gene3DG3DSA:1.10.601.102.7E-4115159No hitNo description
PROSITE profilePS508639.446154253IPR003340B3 DNA binding domain
SuperFamilySSF1019361.41E-9155242IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0014157253IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.0E-10160245IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAMKKKNRPS FFAVLVQDYI NKLQVPPAFV RKCGFNWPEN AQLRTSCGEI WDVKIEEFNE  60
CKYFTVGWRK FVEDAELRRE EFLVFWFNIN SSIFDVSIFG IGGLERGISV QQNISITEDE  120
LDDDDDDDDD DDDDDDEDDD DDDGDDALAP AGNGPRFDLL LKKHHISRLQ LRKDFVVAAG  180
LLRENAVILE YPPYKRRWTV TLHRYTNVKK FRIDMSRGWS GFRRANDLVC GKTYSFQYIK  240
DKNVVEVKPV EVKPFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00491.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852889.11e-150PREDICTED: uncharacterized protein LOC105972469
TrEMBLA0A022RWB61e-126A0A022RWB6_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-10B3 family protein