PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.H00643.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

C2H2

Protein Properties

Length: 427aa MW: 47310.7 Da PI: 6.7349

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.H00643.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00072	10	32	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k + + +L H+r H Migut.H00643.1.p 10 YVCKICSKICVSGKSLGGHMRIH 32 9********************99 PP
2	zf-C2H2	15.7	4.4e-05	118	139	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg+ F++ L H+r+H Migut.H00643.1.p 118 SCKLCGRGFPSLRALSGHMRSH 139 6********************9 PP
3	zf-C2H2	13.2	0.00026	153	174	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F + + H++tH Migut.H00643.1.p 153 QCKTCGKGFDSMRAMFGHMKTH 174 7********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	2.0E-4	10	33	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.6E-8	10	32	No hit	No description
SMART	SM00355	0.029	10	32	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.58	10	32	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	12	32	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.6E-8	112	139	No hit	No description
SMART	SM00355	0.034	117	139	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.263	117	144	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.5E-6	119	140	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	119	139	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.325	152	179	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.02	152	174	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	4.7E-5	153	176	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.13E-7	153	174	No hit	No description
PROSITE pattern	PS00028	0	154	174	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.13E-7	356	383	No hit	No description
Pfam	PF13912	5.4E-11	361	384	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.058	361	383	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.65	361	383	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	363	383	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MAAEAQVQGY VCKICSKICV SGKSLGGHMR IHLAVIAASK KAAIKSEFAE DDDEDHQSNS 60 DENAKISDEF GEADQNSTYV LRENPKKSWR ISDPKHGLTK TPKNNNEPSS SSPCCYSSCK 120 LCGRGFPSLR ALSGHMRSHS IKNNDRDSHL ANQCKTCGKG FDSMRAMFGH MKTHSKKTRA 180 SDRSNESLSD LENLCPVRRK RSRIRYKGTT TAATYNNTDS TRDNGYVSEE TEEAALCLIM 240 LSRGVTSWSD IDSVKDCSDY FGAENRDVVM DGPFDVSAVK TRRASFEVSE DDSRSCDSAK 300 SDSFKIANLE MVKGFDELQG GIYSGVVPLS DSTELDRVQI QHEQENRDVG IARLGGKIKK 360 HECPTCFKVF PSGQALGGHK RAHYTLPESK IRVDEEEEES TAVIHPDSFD LNKSLWWADE 420 RLMLTN*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MAAEAQVQGY VCKICSKICV SGKSLGGHMR IHLAVIAASK KAAIKSEFAE DDDEDHQSNS  60
DENAKISDEF GEADQNSTYV LRENPKKSWR ISDPKHGLTK TPKNNNEPSS SSPCCYSSCK  120
LCGRGFPSLR ALSGHMRSHS IKNNDRDSHL ANQCKTCGKG FDSMRAMFGH MKTHSKKTRA  180
SDRSNESLSD LENLCPVRRK RSRIRYKGTT TAATYNNTDS TRDNGYVSEE TEEAALCLIM  240
LSRGVTSWSD IDSVKDCSDY FGAENRDVVM DGPFDVSAVK TRRASFEVSE DDSRSCDSAK  300
SDSFKIANLE MVKGFDELQG GIYSGVVPLS DSTELDRVQI QHEQENRDVG IARLGGKIKK  360
HECPTCFKVF PSGQALGGHK RAHYTLPESK IRVDEEEEES TAVIHPDSFD LNKSLWWADE  420
RLMLTN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.H00643.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012856032.1	0.0	PREDICTED: zinc finger protein ZAT1-like
TrEMBL	A0A022RYY1	1e-163	A0A022RYY1_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6927	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26590.1	3e-15	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Migut.H00643.1.p