PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.H00825.1.p

Common Name

LOC105976873, MIMGU_mgv1a010993mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NAC

Protein Properties

Length: 296aa MW: 33942 Da PI: 6.6759

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.H00825.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163	1.1e-50	12	135	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 p+GfrFhPtdeelvv+yL++k++g+ +++ +i+++d+yk++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg dk+v + Migut.H00825.1.p 12 PAGFRFHPTDEELVVHYLCRKCAGQLISI-PIIADIDLYKFDPWQLPDMALYGEKEWYFFSPRDRKYPNGSRPNRSAGTGYWKATGADKPVGK 103 89************************9.88***********6666689*********************************98 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kk Lvfy g+ap+g+kt+W+mheyrl Migut.H00825.1.p 104 --PKTLGIKKALVFYAGKAPRGVKTNWIMHEYRL 135 ..778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-59	8	162	IPR003441	NAC domain
PROSITE profile	PS51005	58.486	11	162	IPR003441	NAC domain
Pfam	PF02365	4.2E-27	12	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MKGGGDQQLN FPAGFRFHPT DEELVVHYLC RKCAGQLISI PIIADIDLYK FDPWQLPDMA 60 LYGEKEWYFF SPRDRKYPNG SRPNRSAGTG YWKATGADKP VGKPKTLGIK KALVFYAGKA 120 PRGVKTNWIM HEYRLANVDR SASAKTNNSR LDDWVLCRLY NKKGTLEKHY NVDHKEVQYF 180 SDVEEQKPNV DAFHYTTSTS AGVKSSPQIF HFDTSESIPK LHNNTDSSSS EHVLSPEVQS 240 ESKWNDFDSC LDYQLNYTMD AAFQDVDLFT SQMQQYSDEQ ISMYQDIFAY MHKPF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-85	5	168	9	174	Stress-induced transcription factor NAC1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.H00825.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012857589.1	0.0	PREDICTED: NAC domain-containing protein 2-like isoform X1
Swissprot	Q39013	1e-119	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A022Q269	0.0	A0A022Q269_ERYGU; Uncharacterized protein
STRING	Migut.H00825.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1239	24	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-121	NAC family protein

Link Out ? help Back to Top
Phytozome	Migut.H00825.1.p
Entrez Gene	105976873

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]