PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01092.1.p
Common NameLOC105956958, MIMGU_mgv1a026489mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 384aa    MW: 44091.9 Da    PI: 5.9515
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01092.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.24.7e-55121411129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL +     ++e+kewyfFs++dkky+tg+r+nrat +g+Wkatg+dk
  Migut.H01092.1.p  12 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLIEkcrIGYEEQKEWYFFSHKDKKYPTGTRTNRATIAGFWKATGRDK 103
                       69****************************.9***************742432234677********************************** PP

               NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +v++ + + +g++ktLvfykgrap+g+ktdW+mheyrle
  Migut.H01092.1.p 104 AVYD-RAKIIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 141
                       ****.9999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-607161IPR003441NAC domain
PROSITE profilePS5100559.33312161IPR003441NAC domain
PfamPF023651.1E-2813140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDNTTTTRES SVPPGFRFHP TDEELVGYYL RKKVASQKID LDVIRDIDLY RIEPWDLIEK  60
CRIGYEEQKE WYFFSHKDKK YPTGTRTNRA TIAGFWKATG RDKAVYDRAK IIGMRKTLVF  120
YKGRAPNGQK TDWIMHEYRL ESQEHGPPQE EGWVVCRAFK KRATGQTNNK STRIINEGWD  180
STYYYDEPTP INNVGSSVVH DDITRHHRFL SSNQKSACKQ EIELVNENLH FLQSSDDQLF  240
VDQLPQLESP SLPPIKRDIT NCRIFPATEI IFDKNNDEEE DDDGYNHNNN NNIIIGGSNT  300
YSSQKKVSAD WRELDKFVAS QLSHDIGGVP SSFESRIHYS TAADHSSDLA GLLLLQTGRD  360
EEANKLNQIS TSDCEFGICI FNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-5111666170NO APICAL MERISTEM PROTEIN
1ut4_B3e-5111666170NO APICAL MERISTEM PROTEIN
1ut7_A3e-5111666170NO APICAL MERISTEM PROTEIN
1ut7_B3e-5111666170NO APICAL MERISTEM PROTEIN
3swm_A3e-5111669173NAC domain-containing protein 19
3swm_B3e-5111669173NAC domain-containing protein 19
3swm_C3e-5111669173NAC domain-containing protein 19
3swm_D3e-5111669173NAC domain-containing protein 19
3swp_A3e-5111669173NAC domain-containing protein 19
3swp_B3e-5111669173NAC domain-containing protein 19
3swp_C3e-5111669173NAC domain-containing protein 19
3swp_D3e-5111669173NAC domain-containing protein 19
4dul_A3e-5111666170NAC domain-containing protein 19
4dul_B3e-5111666170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01092.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836326.10.0PREDICTED: NAC domain-containing protein 76
SwissprotQ9SL411e-133NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A022RE500.0A0A022RE50_ERYGU; Uncharacterized protein
STRINGMigut.H01092.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-123vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]