PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01211.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 208aa    MW: 23702 Da    PI: 5.5157
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01211.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.21.4e-251059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rien + rqvt++kR+ gi KKA+ELSvLCd++va+i+fs+tg+l  ++s
  Migut.H01211.1.p 10 RIENPTSRQVTYAKRKDGIVKKANELSVLCDTDVALIMFSPTGRLTSFAS 59
                      8*********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.062161IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-27275IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-23323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-233859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGRKKLAMRR IENPTSRQVT YAKRKDGIVK KANELSVLCD TDVALIMFSP TGRLTSFAST  60
GSRVEDIFLR FVDRPDELRG GPINNEEFLS GRLKQLKYEA QMLEKIAIIE DLEEKLDKLN  120
RKQRESQEKM RYYEPDVDKI SSILEAGVFQ QYLTSAIQRI QLSKAKLLGN QLVHETTENI  180
ELQETVAVEM EDTTSVTDQS INRNDNG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-17179179MEF2C
5f28_B8e-17179179MEF2C
5f28_C8e-17179179MEF2C
5f28_D8e-17179179MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01211.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830478.11e-117PREDICTED: MADS-box protein SOC1-like isoform X1
TrEMBLA0A2G9HBM01e-101A0A2G9HBM0_9LAMI; MADS box transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-36AGAMOUS-like 104