PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01247.1.p
Common NameLOC105951261, MIMGU_mgv1a007548mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 405aa    MW: 44539 Da    PI: 7.9161
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01247.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.5e-124672127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ++++ C +++rtG C yG++C+F+H++
  Migut.H01247.1.p 46 PGEPDCIYYLRTGACGYGSNCRFNHPF 72
                      5789*********************95 PP
2zf-CCCH375.6e-1295119327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++ C ++++tGtCkyG++Ck++H++
  Migut.H01247.1.p  95 QPDCGYYLKTGTCKYGSTCKYHHPK 119
                       789********************96 PP
3zf-CCCH35.71.4e-11139162427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       + C++++rtG+CkyG  CkF+H++
  Migut.H01247.1.p 139 RACPYYMRTGICKYGYACKFHHPQ 162
                       78********************97 PP
4zf-CCCH33.76.1e-11247272227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++Cr+f+  G CkyG+ Ck++H++
  Migut.H01247.1.p 247 DQPECRYFMNHGSCKYGPDCKYHHPR 272
                       689*********************96 PP
5zf-CCCH34.34e-11289315127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+++  +G+CkyG++C+F H++
  Migut.H01247.1.p 289 PGQAICSHYNLYGICKYGPTCRFDHPM 315
                       5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.084573IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-64572IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-94772IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-65073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-45170IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-592119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.76592120IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-995119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-697120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-498120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7134164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295135163IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5137162IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9138162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5139161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549245273IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-5245272IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8247272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-6248275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5251273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5287314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155288316IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6288315IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8290315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4293313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MPVNRKFQRN ASAIDSVEEM MRRVKVEGND ENGEVGDEPV VYPDRPGEPD CIYYLRTGAC  60
GYGSNCRFNH PFNNAGGQVY GVKNTTIELP ERAGQPDCGY YLKTGTCKYG STCKYHHPKE  120
RQADVLTNML GLPMRQDSRA CPYYMRTGIC KYGYACKFHH PQPALAPNVL PAVVGTVYGA  180
SASSAVPSSA VPQLSAKATY FPTSLQLPQS YMPLFISQSQ GWNAYAGGMN HLSNGMMSAS  240
YLPERPDQPE CRYFMNHGSC KYGPDCKYHH PREKLASISF GPLGLPLRPG QAICSHYNLY  300
GICKYGPTCR FDHPMDGGYH PYAYSMSLPP LANAYIPNIN NTPNIQRILP INETTSSNLS  360
EWINNGAATA SNNKNRTKSI EGDPSDSLPY SSKASSEVIH NESD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01247.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830113.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
TrEMBLA0A022RSU50.0A0A022RSU5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135711016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.26e-86C3H family protein