PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01491.1.p
Common NameMIMGU_mgv1a022013mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HSF
Protein Properties Length: 205aa    MW: 23512.1 Da    PI: 10.1113
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01491.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.71.5e-32241292101
                       HHHHHHHHHCTG...............GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSE CS
      HSF_DNA-bind   2 Flkklyeilede...............elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiw 79 
                       Fl+k+y++le+e               e  +++sw+++gn fvv+ + +f++ +LpkyFkh+nf+SF+RQLn+YgFkk+ +++         w
  Migut.H01491.1.p  24 FLSKTYDLLEEEeicgggrgggaahgvERLRIVSWNSEGNGFVVWSPADFSEAMLPKYFKHNNFSSFIRQLNTYGFKKTASKR---------W 107
                       9*********888999999999999988899************************************************9988.........* PP

                       EEEESXXXXXXXXXXXXXXXXX CS
      HSF_DNA-bind  80 eFkhksFkkgkkellekikrkk 101
                       eF+h++Fk+g+++ll +i rkk
  Migut.H01491.1.p 108 EFQHEKFKRGQRHLLAEIGRKK 129
                       ********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-3419122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-4020128IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.67E-2522128IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-2924128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-97789IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-990102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MATTPPHAPE PAGMTRKIKC PAPFLSKTYD LLEEEEICGG GRGGGAAHGV ERLRIVSWNS  60
EGNGFVVWSP ADFSEAMLPK YFKHNNFSSF IRQLNTYGFK KTASKRWEFQ HEKFKRGQRH  120
LLAEIGRKKC DPSGFPPFLK AKYCSKNKSN NNNNNTKNMV MLMEENNKLR RERKDLEMQI  180
SHFKNLEMKL LECLSQYTTM PLLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdk_A4e-17201287110Heat shock factor protein 2
5hdk_B4e-17201287110Heat shock factor protein 2
5hdk_C4e-17201287110Heat shock factor protein 2
5hdk_D4e-17201287110Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01491.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022886333.11e-87heat stress transcription factor B-2a-like isoform X1
SwissprotP411512e-36HFA1A_ARATH; Heat stress transcription factor A-1a
TrEMBLA0A022RWP31e-151A0A022RWP3_ERYGU; Uncharacterized protein
STRINGMigut.H01491.1.p1e-152(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107071823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.14e-37heat shock factor 1
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Liu HC,Charng YY
    Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development.
    Plant Physiol., 2013. 163(1): p. 276-90
    [PMID:23832625]
  3. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  4. Muench M,Hsin CH,Ferber E,Berger S,Mueller MJ
    Reactive electrophilic oxylipins trigger a heat stress-like response through HSFA1 transcription factors.
    J. Exp. Bot., 2016. 67(21): p. 6139-6148
    [PMID:27811081]