PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01590.1.p
Common NameLOC105962214, MIMGU_mgv1a008484mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family TALE
Protein Properties Length: 373aa    MW: 40842.6 Da    PI: 6.5536
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01590.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-093003342155
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       k +yps++++  LA+ +gL+++q+ +WF N+R ++
  Migut.H01590.1.p 300 KWPYPSESQKLALAEATGLDQKQINNWFINQRKRH 334
                       569*****************************885 PP
2ELK41.13.8e-14254275122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK qLlrKYsgyLgsLkqEF+
  Migut.H01590.1.p 254 ELKGQLLRKYSGYLGSLKQEFM 275
                       9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.5E-17116160IPR005540KNOX1
PfamPF037902.1E-18119156IPR005540KNOX1
SMARTSM012563.9E-26167218IPR005541KNOX2
PfamPF037911.8E-21171216IPR005541KNOX2
PROSITE profilePS5121311.174254274IPR005539ELK domain
PfamPF037896.2E-11254275IPR005539ELK domain
SMARTSM011882.8E-8254275IPR005539ELK domain
PROSITE profilePS5007112.924274337IPR001356Homeobox domain
SMARTSM003891.1E-12276341IPR001356Homeobox domain
SuperFamilySSF466891.28E-19276351IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-28279339IPR009057Homeodomain-like
CDDcd000863.23E-12286338No hitNo description
PfamPF059207.6E-17294333IPR008422Homeobox KN domain
PROSITE patternPS000270312335IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEGGGGGGGN SNSCMMAFGG NNDGFCPMLM MPPHNNHHHT TDGRNNNLFL PLIPSSSNHH  60
HGGGGGGGGG SSMMLEEHHN NGGGGNNNIT STGYYFMESN NNNNNDDGIN GGGGGCSTKD  120
KIMAHPHYHR LLSAYANCQK IGAPPEVVVK LEEACASAAA MGRHGGGTSC VGEDPALDQF  180
MEAYCEMLSK YEQELSKPFK EAMVFLSRIE SQFKSLSLSA PACGEAMERN GSSEEEVDVN  240
NNSSFIDPQA EDRELKGQLL RKYSGYLGSL KQEFMKKRKK GKLPKEARQQ LLDWWSRHYK  300
WPYPSESQKL ALAEATGLDQ KQINNWFINQ RKRHWKPSED MQFVVMDAAH PHYYMDSVLG  360
NPFPMDISQG LL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269278LKQEFMKKRK
2275279KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01590.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841969.10.0PREDICTED: homeobox protein SBH1
SwissprotP466081e-149HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A022R2P10.0A0A022R2P1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-133KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]