PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H02160.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 196aa    MW: 22235.2 Da    PI: 8.5641
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H02160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260107.51.1e-3310107198
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCa+Ck++r+kC+++C+lap fp e++++f++vhk+FG+sn++k++++l+ee+r++a++slv+eA +r +dPv G +g ++++ ++l+  ka+
  Migut.H02160.1.p  10 ACASCKHQRKKCTDKCTLAPFFPVEKSREFQAVHKVFGVSNITKIITNLKEEDRKIAVDSLVWEALCRYKDPVLGPYGDYRRVCEELRLFKAQ 102
                       7***************************************************************************************99999 PP

            DUF260  94 lallk 98 
                        ++ +
  Migut.H02160.1.p 103 FQQFQ 107
                       87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.1699110IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-3210107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MQRNGNSTSA CASCKHQRKK CTDKCTLAPF FPVEKSREFQ AVHKVFGVSN ITKIITNLKE  60
EDRKIAVDSL VWEALCRYKD PVLGPYGDYR RVCEELRLFK AQFQQFQQLP PQELMGNWTN  120
TKVINNINTN NFQSNGSFCP YGYTEKLCAE SGSASALIIP HNRLPNPFNQ QFFLAGQYNP  180
MDSKSMESTL WEASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-20687788LOB family transfactor Ramosa2.1
5ly0_B2e-20687788LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H02160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845044.11e-147PREDICTED: LOB domain-containing protein 2
TrEMBLA0A022QT761e-120A0A022QT76_ERYGU; Uncharacterized protein
STRINGMigut.H02160.1.p1e-146(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101771827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.17e-45LOB domain-containing protein 2