PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H02293.1.p
Common NameMIMGU_mgv1a021820mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26750.3 Da    PI: 5.8151
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H02293.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.85.8e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ien + rqvtfskRr g++KKAeELS+LCda+v +iifsstgkl+eyss
  Migut.H02293.1.p  9 KKIENVTARQVTFSKRRRGLFKKAEELSILCDADVGLIIFSSTGKLFEYSS 59
                      68***********************************************96 PP
2K-box47.48.2e-17961722399
             K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        L+ke+ +  +++R++ Ge+L+ L ++eL++Le+ Le +l+++ +kK e ++++i++lq+k ++l een+ Lr++++
  Migut.H02293.1.p  96 WLNKEVAERSQQLRRMRGEELDGLGIEELHRLEKSLELGLNRVMEKKGEKIMNEINQLQEKGRQLMEENRLLRQQVA 172
                       5777777778999*************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.067161IPR002100Transcription factor, MADS-box
CDDcd002654.71E-40275No hitNo description
PRINTSPR004045.3E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-31376IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.38187177IPR002487Transcription factor, K-box
PfamPF014861.7E-1593171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAREKIKIKK IENVTARQVT FSKRRRGLFK KAEELSILCD ADVGLIIFSS TGKLFEYSST  60
SMKDIVERHN LHSKNLNRLE QPSLELQLVE DSTISWLNKE VAERSQQLRR MRGEELDGLG  120
IEELHRLEKS LELGLNRVME KKGEKIMNEI NQLQEKGRQL MEENRLLRQQ VADIENNGVG  180
KKTVTTESEK MVYDEEGQSS ESVANVCNSA GEHPQDYYDC SDTSLKLGLT PYSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-19169169MEF2C
5f28_B5e-19169169MEF2C
5f28_C5e-19169169MEF2C
5f28_D5e-19169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H02293.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722410.0KP172241.1 Erythranthe guttata short vegetative phase 254 (SVP254) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845117.11e-171PREDICTED: MADS-box protein JOINTLESS-like
SwissprotQ9FUY61e-100JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A022QUI51e-164A0A022QUI5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-89MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]