PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H02390.1.p
Common NameMIMGU_mgv1a020111mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 81aa    MW: 9259.81 Da    PI: 10.7967
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H02390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.32.7e-25958150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      k+ien++nrqvtfskRr g++KKA+E+ vLCd++  +i++s++g+l  +s
  Migut.H02390.1.p  9 KKIENTTNRQVTFSKRRYGLIKKAYEIAVLCDIDLTLIMLSPSGRLSHFS 58
                      78********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.502161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-27277IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-23323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-233859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MGRSKLPIKK IENTTNRQVT FSKRRYGLIK KAYEIAVLCD IDLTLIMLSP SGRLSHFSGR  60
KRVEDVIYRY INLSDRDRGG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-16175174MEF2 CHIMERA
6byy_B1e-16175174MEF2 CHIMERA
6byy_C1e-16175174MEF2 CHIMERA
6byy_D1e-16175174MEF2 CHIMERA
6bz1_A9e-17175174MEF2 CHIMERA
6bz1_B9e-17175174MEF2 CHIMERA
6bz1_C9e-17175174MEF2 CHIMERA
6bz1_D9e-17175174MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H02390.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097601.14e-50agamous-like MADS-box protein AGL66
RefseqXP_012844938.12e-52PREDICTED: MADS-box transcription factor 18-like
SwissprotQ1PFC21e-35AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A022QT106e-51A0A022QT10_ERYGU; Uncharacterized protein
TrEMBLA0A4D8YQK27e-49A0A4D8YQK2_SALSN; Uncharacterized protein
TrEMBLA0A4D9AL808e-49A0A4D9AL80_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61831925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.15e-38AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]