PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H02547.1.p
Common NameLOC105965039, MIMGU_mgv1a022645mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ZF-HD
Protein Properties Length: 256aa    MW: 27548.2 Da    PI: 9.4273
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H02547.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer963.1e-3074129258
       ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                       ++v+Y eClkNhAa++Gg+a+DGCgEfm+  geeg+ +alkC+AC+CHRnFHR+ + 
  Migut.H02547.1.p  74 KSVKYMECLKNHAAAIGGTATDGCGEFMAG-GEEGSLEALKCSACNCHRNFHRKIQL 129
                       679**************************9.999********************875 PP
2Homeobox14.94.6e-05182238153
                       TT--SS--HHHHHHHHHHHH.....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFe.....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                       +r Rt+f++eq e ++ +F+     k  +++++e +   +++g++ ++ kvW +N ++
  Migut.H02547.1.p 182 KRYRTKFSQEQKEKMQ-VFAeraswKITKLDESEVRSFCQEIGIKRKVLKVWMHNNKY 238
                       799***********97.566477667899**************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.9E-2776127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2077126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.1E-2877126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.36478127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.98E-18169242IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-27172243IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-27181238IPR006455Homeodomain, ZF-HD class
CDDcd000860.00731182238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MMMSSPMSQA QPKPLLAIQT TTSPTSESDH QEYHHGGGGG GGGGGDNINI NGNINNILQL  60
SPPLGLPPSS LQKKSVKYME CLKNHAAAIG GTATDGCGEF MAGGEEGSLE ALKCSACNCH  120
RNFHRKIQLA EHHHQLMFMK KRSTSGSGVY INGAGEAAEI GLAIGGGGHN QTSLSSGELG  180
KKRYRTKFSQ EQKEKMQVFA ERASWKITKL DESEVRSFCQ EIGIKRKVLK VWMHNNKYHL  240
TKKTTTTTAT TTSVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-191822371873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H02547.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845004.10.0PREDICTED: zinc-finger homeodomain protein 3-like
SwissprotO647225e-55ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A022QUE00.0A0A022QUE0_ERYGU; Uncharacterized protein
STRINGMigut.H02547.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.17e-51homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]