PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I00005.1.p
Common NameMIMGU_mgv1a009285mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family Dof
Protein Properties Length: 348aa    MW: 38380.5 Da    PI: 7.3347
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I00005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.6e-3943103262
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       +e++ kcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s
  Migut.I00005.1.p  43 HEQSPKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 103
                       67889*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-273197IPR003851Zinc finger, Dof-type
PfamPF027011.1E-3245101IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.65847101IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104985IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDSSPISTPS GGDEENNINS ILACGGRSPT LMAAERSRLR PQHEQSPKCP RCESTHTKFC  60
YYNNYSLSQP RYFCKTCRRY WTKGGTLRNI PVGGGCRKNK KVSSSSSASA ANKKSDHHPP  120
PPPSSALVPL NRNNHNHNNN PSADDDENHV HLGFSDQLHF SSLHASGFFN NAGSNNNFVL  180
DNNNNNNIIN NHHTPIDFMD NKYGDFGGMM ITGSGGGGNN NADDHNAVNF HGFPFGLSSS  240
FLDHHHGSSN SAPINILESC QRLMLPYDNP NQNQNHNHDY NNHNHNHNNN HEVIDVKPNS  300
KILSLEWNDY HNHHHHQQST GYNFGGLGSW TGLMNGYGSN PATNPLV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I00005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5425075e-45AF542507.1 Oryza sativa Dof-like protein 34 mRNA, partial cds.
GenBankAK3763885e-45AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18.
GenBankAM0843605e-45AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2.
GenBankCP0126105e-45CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankFP1003505e-45FP100350.1 Phyllostachys edulis cDNA clone: bphylf036a01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831218.10.0PREDICTED: dof zinc finger protein DOF5.6
TrEMBLA0A022RR810.0A0A022RR81_ERYGU; Uncharacterized protein
STRINGMigut.I00005.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48952240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.14e-35Dof family protein