PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I00200.1.p
Common NameLOC105959705, MIMGU_mgv1a025627mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 319aa    MW: 35824.2 Da    PI: 6.2656
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I00200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.27.8e-54191451129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+++yL kkv ++++++  +i evd++kvePw+Lp ++k +ekewyfF+ rdkky+tg+r+nrat++gyWkatgkdke++
  Migut.I00200.1.p  19 LPPGFRFHPTDEELITQYLSKKVVDSRFTC-VAIGEVDMNKVEPWELPWRAKLGEKEWYFFCIRDKKYPTGQRTNRATAEGYWKATGKDKEIF 110
                       79*************************999.67***************888999*************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + +++lvg+kktLvfykgrapkgek++Wv heyrle
  Migut.I00200.1.p 111 R-GKSLVGMKKTLVFYKGRAPKGEKSNWVSHEYRLE 145
                       *.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-5816169IPR003441NAC domain
PROSITE profilePS5100556.07419169IPR003441NAC domain
PfamPF023658.5E-2720144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MMDNRNHEEV KSDDGLINLP PGFRFHPTDE ELITQYLSKK VVDSRFTCVA IGEVDMNKVE  60
PWELPWRAKL GEKEWYFFCI RDKKYPTGQR TNRATAEGYW KATGKDKEIF RGKSLVGMKK  120
TLVFYKGRAP KGEKSNWVSH EYRLEGNFSI LNLPKSSKSD WVISRVFQKA IGGKKVHISG  180
LMNNNQLFDN SSTLPPLMDP AVRPGGGEPP GLVHCFSAAV GGEAAHENFM ADILNNPIFP  240
SSCSSNPMDS FQTFPSWAQY QYPVQPGLQY PGSGSDPRTR FANYSEESPM GTENKVSGED  300
EEDADAIGPQ DLDSMWRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-5161752171NO APICAL MERISTEM PROTEIN
1ut4_B8e-5161752171NO APICAL MERISTEM PROTEIN
1ut7_A8e-5161752171NO APICAL MERISTEM PROTEIN
1ut7_B8e-5161752171NO APICAL MERISTEM PROTEIN
4dul_A8e-5161752171NAC domain-containing protein 19
4dul_B8e-5161752171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I00200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012839296.10.0PREDICTED: NAC domain-containing protein 100
SwissprotQ9FLJ25e-97NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A022R5F70.0A0A022R5F7_ERYGU; Uncharacterized protein
STRINGMigut.I00200.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-99NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]