PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I00364.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 63aa    MW: 7299.67 Da    PI: 10.8312
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I00364.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.81.9e-25959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      kri+++s r + fskRrng++KKA ELSvLCd++va i fs++gklyey+s
  Migut.I00364.1.p  9 KRIKENSARMICFSKRRNGLIKKARELSVLCDVDVAAIFFSKRGKLYEYCS 59
                      79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.5E-29160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.179161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-25161IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-24323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MGRKRLEIKR IKENSARMIC FSKRRNGLIK KARELSVLCD VDVAAIFFSK RGKLYEYCST  60
DR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-17161161MEF2C
5f28_B5e-17161161MEF2C
5f28_C5e-17161161MEF2C
5f28_D5e-17161161MEF2C
6byy_A6e-17161161MEF2 CHIMERA
6byy_B6e-17161161MEF2 CHIMERA
6byy_C6e-17161161MEF2 CHIMERA
6byy_D6e-17161161MEF2 CHIMERA
6bz1_A5e-17161161MEF2 CHIMERA
6bz1_B5e-17161161MEF2 CHIMERA
6bz1_C5e-17161161MEF2 CHIMERA
6bz1_D5e-17161161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I00364.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722426e-56KP172242.1 Erythranthe guttata MADS affecting flowering 465 (MAF465) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842709.19e-37PREDICTED: MADS-box transcription factor 7-like
SwissprotQ8LLR09e-21MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBLA0A022R3T85e-32A0A022R3T8_ERYGU; Uncharacterized protein
TrEMBLA0A109NSP53e-32A0A109NSP5_ERYGU; MADS affecting flowering 465 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.41e-23MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]