PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I00404.1.p
Common NameMIMGU_mgv1a006823mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 256aa    MW: 29351.9 Da    PI: 11.5542
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I00404.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.71.3e-2283130249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                        i+++  r+vtfskRr+g++KKA ELSvLC++++a+iifs  g+ y +
  Migut.I00404.1.p  83 LISDENARTVTFSKRRAGLFKKATELSVLCGTQIALIIFSLGGRAYSF 130
                       699*************************************99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.05874134IPR002100Transcription factor, MADS-box
SMARTSM004329.6E-3174133IPR002100Transcription factor, MADS-box
CDDcd002652.58E-3075143No hitNo description
SuperFamilySSF554551.05E-2675149IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-197696IPR002100Transcription factor, MADS-box
PfamPF003191.9E-2284130IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-1996111IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-19111132IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVITTRIRGS NCLAIFNAPK NPYLIRVFGV SFLPTIPQSF NLPRYLRQSF LKFLNFNWIS  60
SAHMAPPQGR KKSQGRRKIE MKLISDENAR TVTFSKRRAG LFKKATELSV LCGTQIALII  120
FSLGGRAYSF GNPSVGSVLD RFRSKNRNPN VQDSVHATRI RSATLQQLKE QCDQKNKELE  180
IRKIRGKEIE ATLEGSSCQI SEEQLNLLDF DQLKQLKEKM ENLRDNLRRG LTNRPRTGSN  240
KHSRSRLDFI RRRQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A2e-1459146188PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B2e-1459146188PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I00404.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827635.10.0PREDICTED: uncharacterized protein LOC105948920
TrEMBLA0A022PXS41e-180A0A022PXS4_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1565666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-31AGAMOUS-like 29