PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.I00537.1.p

Common Name

LOC105974085, MIMGU_mgv1a013231mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NF-YC

Protein Properties

Length: 228aa MW: 24710.9 Da PI: 4.7097

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.I00537.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.5	3e-56	37	141	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql++fw++q ie+a+dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifd Migut.I00537.1.p 37 QLQMFWNYQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFD 129 89***998899**************************************************************************** PP NF-YC 91 flvdivprdelk 102 flvdivprdelk Migut.I00537.1.p 130 FLVDIVPRDELK 141 *******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.22E-33	26	131	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.6E-37	51	123	IPR009072	Histone-fold
Pfam	PF00808	1.5E-20	59	122	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MEQQNNQPQG GAAPPPQAVA YPPQPPYQQL LQQQQQQLQM FWNYQRQEIE QANDFKNHQL 60 PLARIKKIMK ADEDVRMISA EAPILFAKAC ELFILELTIR SWLHAEENKR RTLQKNDIAA 120 AITRTDIFDF LVDIVPRDEL KDEAAALGGI VGAPVVGAAG VTGVPYYYPP MGHPMMGRPA 180 VPGVDPGVYG QPSLAWQSVW QTSAAEDGSY GSGGGGGSGQ GNLDGQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-55	45	137	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	115	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.I00537.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012854598.1	1e-166	PREDICTED: nuclear transcription factor Y subunit C-1-like
Swissprot	Q9SMP0	5e-92	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A022Q538	1e-165	A0A022Q538_ERYGU; Uncharacterized protein
STRING	Migut.I00537.1.p	1e-165	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4087	21	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	6e-75	nuclear factor Y, subunit C4

Link Out ? help Back to Top
Phytozome	Migut.I00537.1.p
Entrez Gene	105974085

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]