PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I00800.1.p
Common NameLOC105975557, MIMGU_mgv1a012258mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 257aa    MW: 29816.9 Da    PI: 9.1887
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I00800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-084063125
                      --S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                      yk e+C+ f+r G C yGd+C+F+H
  Migut.I00800.1.p 40 YKSEICSLFQR-GKCYYGDNCHFSH 63
                      99*********.************* PP
2zf-CCCH23.21.2e-07102124426
                       ---SGGGGTS.--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartG.tCkyGdrCkFaHg 26 
                       + Cr ++ +G  C++GdrC+F H+
  Migut.I00800.1.p 102 KVCR-WFSGGaVCPFGDRCSFLHV 124
                       6788.888889************6 PP
3zf-CCCH39.68.7e-13151177127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC+ ++r+G C++G +C++aHg+
  Migut.I00800.1.p 151 WKTKLCMKWLRFGDCPFGLKCSYAHGR 177
                       8************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.71E-73865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4693966IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-53965IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-64063IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-84064IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-994127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-797128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.60199126IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-6100124IPR000571Zinc finger, CCCH-type
SMARTSM003560.011100125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-13148181IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-9149181IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-5150177IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10151177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389151178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAHFKENPFV QSRIRTRPNF DFNKPRIPLS VNRSKLNIPY KSEICSLFQR GKCYYGDNCH  60
FSHTTTVIRN LGFQSVAAAA VEEHLNNEEE DDSRRNSVYE SKVCRWFSGG AVCPFGDRCS  120
FLHVIEERVH SDHEIRCWNF NYGVNCDKSV WKTKLCMKWL RFGDCPFGLK CSYAHGREEL  180
QEAGAYAKME SRCTRFAGKR QNAASLSEVG KKIAKKMQLK GKRCLMEWKF KKTNRIYADW  240
IDDTHNFDVS FSKVES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I00800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856210.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A022PZ470.0A0A022PZ47_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-27C3H family protein