PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I00908.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GATA
Protein Properties Length: 339aa    MW: 36598.4 Da    PI: 6.6337
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I00908.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.4e-17225259135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Migut.I00908.1.p 225 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 259
                       99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.9E-7914314IPR016679Transcription factor, GATA, plant
SMARTSM004011.2E-16219269IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.479219255IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.0E-14220256IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.55E-15221282No hitNo description
CDDcd002021.10E-12224271No hitNo description
PfamPF003201.3E-14225259IPR000679Zinc finger, GATA-type
PROSITE patternPS003440225250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEYLAGDYAE FSSVDNGNFN HSSNGGGGVH FIVDDLLDFS KADETMTDAF FDTLAGNSGD  60
SSTVTAVDSC NSSVSGGGDG QFNGDVSCRS FNDTQFSGNE LCVPYDDLAE LEWLSNFVEE  120
SFSTDDLHFI PATNAAAAAA AAAATKAVAA DASSSVITTN SPPQPIFPTE VSVPGKARSK  180
RSRAAPCDWS SRLLLLSPSS NPQAAPPPQQ QHKKREPSET PGRRCLHCAS EKTPQWRTGP  240
MGPKTLCNAC GVRYKSGRLV PEYRPAASPT FISARHSNSH RKVLELRRQK EVQVVHHHKQ  300
HHHPQLISHH QPSIFNGCDE FLIHHHGSIN GPDLRHMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I00908.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856815.10.0PREDICTED: GATA transcription factor 12-like
SwissprotO826324e-76GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A022Q2T10.0A0A022Q2T1_ERYGU; Uncharacterized protein
STRINGMigut.I00908.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.19e-67GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]