PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I01108.1.p
Common NameLOC105975563, MIMGU_mgv1a007156mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 418aa    MW: 48009.1 Da    PI: 8.6088
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I01108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-08389410426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        +Cr+f + G C yGdrCk+ H 
  Migut.I01108.1.p 389 QICRHFVQ-GRCTYGDRCKYLHE 410
                       68******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.302.9E-881128IPR003034SAP domain
SuperFamilySSF689068.06E-782128No hitNo description
PROSITE profilePS508009.94693127IPR003034SAP domain
SMARTSM005139.3E-493127IPR003034SAP domain
PfamPF020371.0E-894127IPR003034SAP domain
PROSITE profilePS5010316.549386412IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6386411IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-7387410IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-7388410IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-6388410IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEYSEEQQYE ESEIGSEYSD DSQDDPTFDV LEETRLTFSD LTLNRKIDTH IVNGKNEKEA  60
EESDAIETVM PELDEKDKKS YETIQKIIEG GEVERLKVEQ CKVYLRKHGL RLSGKKETLI  120
LRIKEHIDVV NGDGEKKYPA SSFVLNCKGD ACMGDVVMFE QNVYELFNIA SRSACGPPTG  180
TRVVAGRIVK ESYGAAKQQH TFTIEVLWSK GEKPLPPLHP LLIKGRNLYR LKTMRQKWDD  240
EGERQKILSE KHARGGAARS NREARIQEKE IRKTHKGDRT TKNPVPVNRE KPINQAIEQE  300
NILHRQPNYI PAQHIHQRQP LTSTNYGFQR GGPHESSILR NPQTYFPNAN HLENPLLQRP  360
MLKENRGLHG FGGHNRNIQQ TRAYVQQKQI CRHFVQGRCT YGDRCKYLHE PAAANMR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I01108.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856218.10.0PREDICTED: zinc finger CCCH domain-containing protein 62-like
TrEMBLA0A022Q2C80.0A0A022Q2C8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA330388