PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00411.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 186aa    MW: 20335.6 Da    PI: 6.5182
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00411.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.59.6e-5932128298
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                       reqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisfvtseasdkcqrekrktingddllwa+atlGfedy++plkvyl++yre+e
  Migut.J00411.1.p  32 REQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLARYREME 124
                       89******************************************************************************************* PP

             NF-YB  95 gekk 98 
                       g++k
  Migut.J00411.1.p 125 GDTK 128
                       *975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.4E-5529145IPR009072Histone-fold
SuperFamilySSF471132.79E-4134149IPR009072Histone-fold
PfamPF008082.7E-2837101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-206583No hitNo description
PROSITE patternPS0068506884IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-2084102No hitNo description
PRINTSPR006151.3E-20103121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MADGLSSQEA PGSPNGGSHD SGGDLSPRSG YREQDRFLPI ANISRIMKKA LPANGKIAKD  60
AKETVQECVS EFISFVTSEA SDKCQREKRK TINGDDLLWA MATLGFEDYI DPLKVYLARY  120
REMEGDTKGS GKNADGSSRK DGLQQQIPNS QSQHVHQGSF SQGMNYGNVQ QQAQHMMVKM  180
QGMDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B8e-4830122294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A8e-4830122294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00411.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831929.11e-137PREDICTED: nuclear transcription factor Y subunit B-1-like
RefseqXP_012831930.11e-137PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotQ8VYK41e-83NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A1S3YCJ21e-104A0A1S3YCJ2_TOBAC; nuclear transcription factor Y subunit B-10-like isoform X1
STRINGMigut.J00411.1.p1e-136(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.36e-86nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]