PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.J00627.1.p

Common Name

MIMGU_mgv11b015323mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 102aa MW: 12032 Da PI: 7.5596

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.J00627.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	65.7	1.1e-20	9	96	13	100
DUF260 13 akdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++C+la+yf+ae++++f+nv +lF ++n lk+lk++++eer+++++sl++eA++r++ P++ ++v ++l ++e++++el+ + ++ Migut.J00627.1.p 9 RQNCTLAKYFAAERSNDFENVYHLFVMQNTLKILKSVEKEERNATIESLIMEARMRLEHPMHYHFSVARELGFEVEKTEKELEIVCQK 96 689*******************************************************************************998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.13	1	97	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-17	7	93	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MQAPTQKMRQ NCTLAKYFAA ERSNDFENVY HLFVMQNTLK ILKSVEKEER NATIESLIME 60 ARMRLEHPMH YHFSVARELG FEVEKTEKEL EIVCQKIHIC K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.J00627.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012837818.1	5e-51	PREDICTED: LOB domain-containing protein 7-like
Refseq	XP_012837821.1	5e-51	PREDICTED: LOB domain-containing protein 7-like
TrEMBL	A0A022S1S3	2e-68	A0A022S1S3_ERYGU; Uncharacterized protein
STRING	Migut.J00627.1.p	3e-69	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2866	17	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-14	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Migut.J00627.1.p