PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00628.1.p
Common NameLOC105958356, LOC105958359, MIMGU_mgv1a025064mg, MIMGU_mgv1a026811mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 134aa    MW: 15117.3 Da    PI: 7.9125
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00628.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260112.43.2e-35111111101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca+Ck++rrkC ++Cvla+yfpae++ +f+nv +lFG++n lk+lk+++eeer+++++sl++eA++r++ Pv+G ++v +kl+ ++e++++e
  Migut.J00628.1.p  11 PCASCKHQRRKCDQNCVLAKYFPAERSDDFENVYHLFGMQNTLKILKSVEEEERDATIESLIMEAKMRLEHPVHGHFSVARKLSIEIEKTEKE 103
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       l+ +++++
  Migut.J00628.1.p 104 LEIVRQKI 111
                       ***99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.15910111IPR004883Lateral organ boundaries, LOB
PfamPF031958.5E-3311108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MANAVPVAQK PCASCKHQRR KCDQNCVLAK YFPAERSDDF ENVYHLFGMQ NTLKILKSVE  60
EEERDATIES LIMEAKMRLE HPVHGHFSVA RKLSIEIEKT EKELEIVRQK IHICKGADNR  120
AGPSTRGGQS DQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2121112111LOB family transfactor Ramosa2.1
5ly0_B2e-2121112111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00628.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837818.12e-96PREDICTED: LOB domain-containing protein 7-like
RefseqXP_012837821.12e-96PREDICTED: LOB domain-containing protein 7-like
TrEMBLA0A022RAV26e-95A0A022RAV2_ERYGU; Uncharacterized protein
STRINGMigut.J00628.1.p1e-95(Erythranthe guttata)
STRINGMigut.J00632.1.p1e-95(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.17e-24LOB domain-containing protein 7