PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00630.1.p
Common NameLOC105958358, MIMGU_mgv1a026326mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 108aa    MW: 12262.1 Da    PI: 7.0289
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00630.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.52.8e-3011106196
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++rrkC ++C+la  f+ae++++f+nv +lFG++n lk+lk++++eer+++++sl++eA +r++ P++  ++v +kl  ++e++++e
  Migut.J00630.1.p  11 ACAACKHQRRKCDQNCTLANNFAAERSNDFENVYHLFGMQNTLKILKSVEKEERNATIESLIMEAGMRLEHPMHDHFSVARKLGFEVEKTEKE 103
                       7******************************************************************************************99 PP

            DUF260  94 lal 96 
                       l+ 
  Migut.J00630.1.p 104 LEI 106
                       975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.240.104.2E-4825IPR001138Zn(2)-C6 fungal-type DNA-binding domain
PROSITE profilePS5089119.35410107IPR004883Lateral organ boundaries, LOB
PfamPF031957.8E-2811106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MANAVPVVQK ACAACKHQRR KCDQNCTLAN NFAAERSNDF ENVYHLFGMQ NTLKILKSVE  60
KEERNATIES LIMEAGMRLE HPMHDHFSVA RKLGFEVEKT EKELEIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-1521052105LOB family transfactor Ramosa2.1
5ly0_B2e-1521052105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00630.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837820.17e-75PREDICTED: LOB domain-containing protein 22-like
TrEMBLA0A022RBQ02e-73A0A022RBQ0_ERYGU; Uncharacterized protein
STRINGMigut.J00630.1.p3e-74(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-23LOB domain-containing protein 22