PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.J00631.1.p

Common Name

LOC105966466, MIMGU_mgv1a023404mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 86aa MW: 9879.26 Da PI: 6.7964

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.J00631.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	42	2.6e-13	1	62	39	100
DUF260 39 asnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++n+lk+lk+++e+er+++++sl++eA++r++ Pv+G ++v +kl+ ++e++++el+ ++++ Migut.J00631.1.p 1 MQNMLKILKSVDEDERDTTIESLIMEARMRLEYPVHGHFSVARKLSFEIEKAEKELEIVRQK 62 589******************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.146	1	63	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.4E-11	2	60	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MQNMLKILKS VDEDERDTTI ESLIMEARMR LEYPVHGHFS VARKLSFEIE KAEKELEIVR 60 QKNHICKGAD NRASPSTREG RPDQP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.J00631.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012846478.1	5e-55	PREDICTED: LOB domain-containing protein 7-like
TrEMBL	A0A022RZR7	1e-53	A0A022RZR7_ERYGU; Uncharacterized protein
STRING	Migut.J00631.1.p	6e-57	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2866	17	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-09	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Migut.J00631.1.p
Entrez Gene	105966466