PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00633.1.p
Common NameLOC105958360, MIMGU_mgv1a025208mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 134aa    MW: 15038.2 Da    PI: 8.7316
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00633.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260106.52.2e-33111111101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++rrkC ++C+la+yfp e++ +++nv +lFG +n lk+lk+++e+er++a++sl++eA++r++ Pv+G ++v +kl+ ++e++++e
  Migut.J00633.1.p  11 ACAACKHHRRKCDQNCALAKYFPPEKSDDYENVYHLFGIQNTLKILKSVDENERDAAIESLIMEARMRLEYPVHGHFSVARKLSIEIEKAEKE 103
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       l+ +++++
  Migut.J00633.1.p 104 LEIVRQKI 111
                       ***99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.18610111IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-3111108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MANAGPSVYK ACAACKHHRR KCDQNCALAK YFPPEKSDDY ENVYHLFGIQ NTLKILKSVD  60
ENERDAAIES LIMEARMRLE YPVHGHFSVA RKLSIEIEKA EKELEIVRQK IHICKGAVNR  120
AGPSTRGGRS DQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2021112111LOB family transfactor Ramosa2.1
5ly0_B4e-2021112111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00633.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837822.15e-96PREDICTED: LOB domain-containing protein 7-like
TrEMBLA0A022RE351e-94A0A022RE35_ERYGU; Uncharacterized protein
STRINGMigut.J00633.1.p2e-95(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.12e-23LOB domain-containing protein 7