PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00799.1.p
Common NameLOC105950014, MIMGU_mgv1a002353mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HB-PHD
Protein Properties Length: 686aa    MW: 78622.1 Da    PI: 9.5834
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00799.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.8e-09466510953
                       HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
          Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                       ++ +e L  +F++n  p ++ r  L+++lgL+ ++V  WF+N R+
  Migut.J00799.1.p 466 HNAVEKLRLVFAENELPARTLRMSLSEQLGLEFEKVNKWFKNARY 510
                       567899*************************************97 PP
2PHD383.8e-13210265151
                       SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
               PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                       +C+ C+   +  +++++lCd +C+ +fH+kC++++l++e++p g   w+C+ Ck+k
  Migut.J00799.1.p 210 ICAKCKLreALPDNDIILCDgTCNCAFHQKCIDPPLSTENIPPGdqGWFCKFCKKK 265
                       588888854455********56********************9999*******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.08E-14202268IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.0E-11206266IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.149208265IPR019787Zinc finger, PHD-finger
PfamPF006283.4E-10210264IPR019787Zinc finger, PHD-finger
SMARTSM002498.6E-8210263IPR001965Zinc finger, PHD-type
CDDcd155045.29E-30211262No hitNo description
PROSITE patternPS013590211262IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.0E-11447509IPR009057Homeodomain-like
SuperFamilySSF466896.42E-9454510IPR009057Homeodomain-like
PROSITE profilePS5007111.726455515IPR001356Homeobox domain
SMARTSM003891.4E-6457519IPR001356Homeobox domain
CDDcd000861.02E-5458518No hitNo description
PfamPF000462.1E-6466510IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MSGSAKKEAR RKSSRKDDER TLQSLKQELK PRKRKVGSFL HECNGNTNLK RKIVKKAIVC  60
KTKTSKKQPS LTSLKEKLAT ISKKKKKKIE KKDDRDENLS NSKKQRSRKK RKNNVELDEA  120
SKLQRRTRYL LIRMKLEQNL LDAYSAEGWK GQSREKIRPE KELQRAKMQI LKYKLGIREA  180
IHQLDLLSSK GQISNSAVAP DGSVHHEHII CAKCKLREAL PDNDIILCDG TCNCAFHQKC  240
IDPPLSTENI PPGDQGWFCK FCKKKMEILE ATNAHLGTHF PVDSSWEDVF KEEAALPDGG  300
NYMSCQGDEW PSDDSEDDDY DPDRNEYSCS ESASKSECGA SDCSSSFIVE ERRGRSVDNS  360
LELIGEDSDD INNAEVVSHP RQRASVDYIK LYNEMFGKYA TESEQISDDE EWGPTKRKRK  420
VKESDAASTL MTLGETDEKN SEEIASELDE NRLIKKMRRP IFRLPHNAVE KLRLVFAENE  480
LPARTLRMSL SEQLGLEFEK VNKWFKNARY LALRARKQAE RAQVSENVSP VLEKESLSET  540
SKDVQFYRTE SSENTTSPNP KSSHKFVKRR NSHLLTNSFE IKQCNKRLLQ TAANSNQMSV  600
DVGEDVSLKQ LREKAKKANR KKKSELDEKR DAFEREMERL CEMKSRVENL QQSLLQLPIR  660
RFGNKTNSTH LSVILVPIAQ LKEKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18291KKKKKKIEKK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00799.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828787.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X1
SwissprotP487851e-144PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A022PTS20.0A0A022PTS2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-145pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]