PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00856.1.p
Common NameLOC105970857, MIMGU_mgv1a011944mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family SBP
Protein Properties Length: 267aa    MW: 29896.2 Da    PI: 9.7933
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00856.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP121.73.2e-382298177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                      +CqvegC++dl++akeyh rh++Ce+hsk+p v+v g e+rfCqqCs+ h+lsefD+ krsCrrrL++hn+rrr+ +
  Migut.J00856.1.p 22 CCQVEGCSVDLKSAKEYHGRHRICEFHSKSPRVVVGGFERRFCQQCSKLHDLSEFDDMKRSCRRRLSDHNARRRRVR 98
                      6*************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.8E-311684IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.942097IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.86E-3621102IPR004333Transcription factor, SBP-box
PfamPF031103.1E-302396IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSSVPSSSKR SRAVHRSTQN PCCQVEGCSV DLKSAKEYHG RHRICEFHSK SPRVVVGGFE  60
RRFCQQCSKL HDLSEFDDMK RSCRRRLSDH NARRRRVRPE SIQLTSRGLS YGLYDQRPQN  120
ILMNGYPGGI FQETPRFSSN VIHSNSISNL HMDPPHPSNI SGVLDQSRSP IAPNLLSAHS  180
FLSSNSWSSN EAGKSIPMGG QIVHNNLSMF HSNYNINPAE QPSSSNSPVS LANSSVNNFD  240
QHQEYRLFKA SPYDSGAFYP TTQRNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-2723961184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00856.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851134.10.0PREDICTED: squamosa promoter-binding-like protein 12
SwissprotA2YGR55e-41SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLA0A022QDS40.0A0A022QDS4_ERYGU; Uncharacterized protein
STRINGMigut.J00856.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136441216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-36squamosa promoter binding protein-like 2