PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00955.1.p
Common NameLOC105971045, MIMGU_mgv1a014546mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YA
Protein Properties Length: 187aa    MW: 20603 Da    PI: 9.6269
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00955.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.71.9e-3398154158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       d p+YVNaKQy++Il+RRq+Rak+e+++kl  k+rkpylheSRh+hAl+R Rg+gGrF
  Migut.J00955.1.p  98 DGPIYVNAKQYHGILRRRQTRAKMEAQNKL-VKNRKPYLHESRHQHALNRVRGTGGRF 154
                       57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-3696157IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.26397157IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-24100122IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.3E-28100154IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-24131154IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGKTTSQDHS ASSDSAHDES YGKHGQDMKA ALFLCNPELS INASQAEINQ PIVQFPYAYA  60
DPYYSGLFTA YGPHNMIQPQ VMAAAAGRVP LPGDIPEDGP IYVNAKQYHG ILRRRQTRAK  120
MEAQNKLVKN RKPYLHESRH QHALNRVRGT GGRFLSSKKS QPSDSLPPTG SQINGGQDDQ  180
FRFNYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-2298160264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00955.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012851345.11e-137PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
SwissprotQ93ZH28e-39NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A022QE291e-136A0A022QE29_ERYGU; Uncharacterized protein
STRINGMigut.J00955.1.p1e-137(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50092338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.19e-41nuclear factor Y, subunit A3