PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J01317.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 200aa    MW: 22340 Da    PI: 5.1348
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J01317.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.55.6e-161052345
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      ien+   + tfskRr g+  KA+ELS+LC++++ +iifs+t++
  Migut.J01317.1.p 10 IENQDDLYATFSKRRLGLYNKASELSTLCGVDIGIIIFSPTDN 52
                      8999999********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.6E-15259IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-10222IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-20672IPR002100Transcription factor, MADS-box
PfamPF003196.0E-201056IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.7361060IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-102237IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-103758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAGRQTRGLI ENQDDLYATF SKRRLGLYNK ASELSTLCGV DIGIIIFSPT DNPFSFFHPS  60
MESVIDRFRN PNQPLSDYAR VVEAHTRARI DNLNRRLDEI HKEKDRLKER EKELDEIEGW  120
WEDTPIESLS PEQVQEWKAW FRAFKVKIQN RISELNNGAS TSGAAAAAAD AVAAVPPPPT  180
GGEIVPGMFA QNFVTYSGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J01317.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838634.11e-111PREDICTED: uncharacterized protein LOC105959133
RefseqXP_012855808.11e-114PREDICTED: MADS-box transcription factor 21-like
TrEMBLA0A022QBJ01e-115A0A022QBJ0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-24AGAMOUS-like 61